JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALDH3A2_chr17_19643751_19682596	0/0	g0126	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0127	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0128	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0129	1	0	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0130	1	0	0	0	0	1	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0131	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0132	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0133	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0134	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0135	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0136	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0137	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0138	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0139	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0140	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0141	1	0	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0142	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0143	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0144	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0145	1	1	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0146	1	0	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0147	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0148	1	0	0	0	1	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0149	1	0	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0150	1	0	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0151	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0152	1	0	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0153	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0154	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0155	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0156	1	0	0	1	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0157	1	0	0	0	1	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0158	1	0	0	0	0	1	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0159	1	0	0	0	0	1	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0160	1	0	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3B1_chr11_68005327_68034276	0/0	g0001	78	7	20	38	4	9	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0002	44	13	8	17	2	4	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0003	26	4	2	10	3	7	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0004	12	0	3	9	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0005	11	0	3	8	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0006	10	0	0	10	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0007	9	0	0	6	0	3	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0008	9	9	0	0	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0009	8	8	0	0	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0010	5	0	0	5	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0011	5	0	3	0	2	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0012	5	0	0	5	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0013	4	4	0	0	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0014	4	4	0	0	0	0	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	g0015	3	3	0	0	0	0	ALDH3B1	chr11	68005327	68034276