JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALDH9A1_chr1_165657216_165703562	0/0	g0257	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0258	1	0	0	1	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0259	1	0	0	1	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0260	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0261	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0262	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0263	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0264	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0265	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0266	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0267	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0268	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0269	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0270	1	0	0	0	0	1	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0271	1	0	0	0	0	1	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0272	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0273	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0274	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0275	1	0	0	0	0	1	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0276	1	0	0	0	1	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0277	1	0	0	1	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0278	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0279	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0280	1	1	0	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0281	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0282	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0283	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0284	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0285	1	0	0	0	0	1	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0286	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0287	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0288	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0289	1	0	0	0	1	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0290	1	0	1	0	0	0	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	g0291	1	0	0	0	1	0	ALDH9A1	chr1	165657216	165703562
ALDOA_chr16_30060760_30075414	1/0	g0001	89	30	25	20	3	10	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0002	86	1	15	59	2	9	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/1	g0003	50	2	5	17	4	21	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0004	30	0	1	29	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0005	18	9	5	0	4	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0006	16	0	1	15	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0007	13	10	1	2	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0008	7	7	0	0	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0009	5	0	5	0	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0010	4	3	0	0	0	1	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0011	4	0	0	4	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0012	3	0	0	3	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0013	3	3	0	0	0	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0014	2	1	0	0	1	0	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	g0015	2	0	0	2	0	0	ALDOA	chr16	30060760	30075414