JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALDOB_chr9_101415560_101440774	0/0	g0120	1	1	0	0	0	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	g0121	1	1	0	0	0	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	g0122	1	1	0	0	0	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	g0123	1	0	0	0	1	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	g0124	1	1	0	0	0	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	g0125	1	0	0	1	0	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	1/0	g0126	1	0	0	0	0	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	g0127	1	0	0	0	1	0	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	g0128	1	0	1	0	0	0	ALDOB	chr9	101415560	101440774
ALDOC_chr17_28568120_28581895	1/1	g0001	312	69	57	142	7	35	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0002	7	5	2	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0003	3	0	2	0	0	1	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0004	3	0	0	3	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0005	3	3	0	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0006	2	0	2	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0007	2	0	0	0	0	2	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0008	2	0	0	2	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0009	2	2	0	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0010	1	1	0	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0011	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0012	1	0	0	0	1	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0013	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0014	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0015	1	1	0	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0016	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0017	1	1	0	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0018	1	1	0	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0019	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0020	1	1	0	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0021	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0022	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0023	1	0	1	0	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0024	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	g0025	1	0	0	1	0	0	ALDOC	chr17	28568120	28581895
ALG10B_chr12_38311774_38334721	0/0	g0001	105	5	19	69	1	11	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/1	g0002	100	23	35	22	6	13	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0003	93	0	2	85	0	6	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0004	78	12	23	24	8	11	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	1/0	g0005	15	14	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0006	11	11	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0007	7	6	1	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0008	7	0	0	7	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0009	5	5	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0010	5	4	1	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0011	4	4	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0012	3	3	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0013	3	2	0	0	1	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0014	2	2	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0015	2	1	1	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0016	2	2	0	0	0	0	ALG10B	chr12	38311774	38334721