JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALG10B_chr12_38311774_38334721	0/0	g0017	2	2	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0018	1	1	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0019	1	0	1	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0020	1	0	1	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0021	1	1	0	0	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0022	1	0	0	0	0	1	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0023	1	0	0	1	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0024	1	0	0	1	0	0	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	g0025	1	0	0	1	0	0	ALG10B	chr12	38311774	38334721
ALG10_chr12_34017496_34033302	1/0	g0001	126	11	22	71	2	19	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/1	g0002	44	6	17	7	5	8	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0003	40	17	9	9	3	2	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0004	30	0	6	21	2	1	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0005	13	12	1	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0006	13	0	8	5	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0007	10	9	1	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0008	10	10	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0009	5	1	1	0	0	3	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0010	5	5	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0011	5	1	4	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0012	5	4	1	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0013	4	4	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0014	4	3	1	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0015	4	4	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0016	2	2	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0017	2	2	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0018	2	2	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0019	1	0	0	0	0	1	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0020	1	1	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0021	1	1	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0022	1	0	0	1	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0023	1	1	0	0	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0024	1	0	0	1	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0025	1	0	0	1	0	0	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	g0026	1	0	1	0	0	0	ALG10	chr12	34017496	34033302
ALG11_chr13_52007398_52038600	0/0	g0001	78	8	15	41	5	9	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0002	64	11	10	37	1	5	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0003	22	1	11	5	3	2	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0004	12	2	2	8	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0005	11	1	0	10	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0006	10	3	3	3	0	1	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	1/0	g0007	9	8	0	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0008	7	1	1	3	0	2	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0009	7	0	7	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0010	6	1	1	4	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0011	6	1	4	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0012	5	0	0	5	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0013	5	0	1	4	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0014	4	0	0	0	0	4	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0015	4	0	2	1	0	1	ALG11	chr13	52007398	52038600