JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALG11_chr13_52007398_52038600	0/0	g0066	1	1	0	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0067	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0068	1	1	0	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0069	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0070	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0071	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0072	1	1	0	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0073	1	1	0	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0074	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0075	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0076	1	0	1	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0077	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0078	1	0	1	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0079	1	0	0	0	1	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0080	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0081	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0082	1	0	0	0	1	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0083	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0084	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0085	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0086	1	0	1	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0087	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0088	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0089	1	0	0	0	0	1	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0090	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0091	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0092	1	0	1	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0093	1	0	0	0	0	1	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0094	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0095	1	0	0	0	1	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0096	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0097	1	0	0	0	1	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0098	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0099	1	0	1	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0100	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0101	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0102	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0103	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0104	1	1	0	0	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0105	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	g0106	1	0	0	1	0	0	ALG11	chr13	52007398	52038600
ALG12_chr22_49895229_49923438	1/1	g0001	45	2	21	13	2	5	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0002	10	0	2	8	0	0	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0003	9	0	8	1	0	0	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0004	9	0	0	9	0	0	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0005	8	0	2	5	0	1	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0006	7	0	0	7	0	0	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0007	6	0	1	2	0	3	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0008	6	5	1	0	0	0	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	g0009	5	0	0	5	0	0	ALG12	chr22	49895229	49923438