JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALG1L2_chr3_130076831_130103390	0/0	g0144	1	1	0	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0145	1	1	0	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0146	1	0	0	0	0	1	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0147	1	0	0	1	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0148	1	0	0	1	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0149	1	0	0	1	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0150	1	1	0	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0151	1	0	0	1	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0152	1	0	0	0	0	1	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0153	1	1	0	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0154	1	0	1	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0155	1	1	0	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0156	1	0	1	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0157	1	1	0	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0158	1	1	0	0	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0159	1	0	0	1	0	0	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	g0160	1	0	0	1	0	0	ALG1L2	chr3	130076831	130103390
ALG1_chr16_5066843_5092379	0/0	g0001	85	8	13	46	3	15	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/1	g0002	52	2	15	24	4	6	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0003	37	0	16	21	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0004	31	7	6	16	0	2	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0005	18	4	2	12	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0006	8	8	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0007	8	0	0	8	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0008	8	2	2	2	0	2	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0009	8	0	0	8	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0010	7	6	1	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0011	7	0	5	0	1	1	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0012	6	0	0	6	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0013	5	5	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0014	5	5	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0015	4	0	2	2	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0016	4	4	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0017	4	0	0	4	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0018	4	4	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0019	3	0	0	0	1	2	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0020	3	3	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0021	3	1	1	0	0	1	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	1/0	g0022	3	2	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0023	3	3	0	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0024	3	1	0	2	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0025	3	0	3	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0026	3	0	0	3	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0027	3	0	0	3	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0028	2	0	0	0	0	2	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0029	2	0	0	2	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0030	2	1	0	1	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0031	2	0	2	0	0	0	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0032	2	0	0	0	1	1	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	g0033	2	0	2	0	0	0	ALG1	chr16	5066843	5092379