JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALG2_chr9_99211425_99226942	0/0	g0008	2	0	1	0	0	1	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0009	2	2	0	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0010	2	2	0	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0011	2	0	0	0	0	2	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0012	2	2	0	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0013	1	0	1	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0014	1	0	0	1	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0015	1	0	0	1	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0016	1	0	1	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0017	1	0	1	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0018	1	0	1	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0019	1	0	1	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0020	1	1	0	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0021	1	0	1	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0022	1	0	0	1	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0023	1	1	0	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0024	1	0	0	1	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0025	1	1	0	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0026	1	0	0	0	0	1	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0027	1	1	0	0	0	0	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	g0028	1	1	0	0	0	0	ALG2	chr9	99211425	99226942
ALG3_chr3_184237301_184253962	1/0	g0001	127	17	32	53	10	14	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/1	g0002	80	21	13	30	4	11	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0003	17	4	2	11	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0004	17	17	0	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0005	12	10	2	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0006	11	0	1	10	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0007	6	1	0	5	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0008	4	3	1	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0009	3	0	3	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0010	3	0	0	3	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0011	3	3	0	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0012	2	0	0	2	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0013	2	0	0	2	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0014	2	2	0	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0015	2	2	0	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0016	2	0	0	2	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0017	2	0	0	2	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0018	2	1	0	0	0	1	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0019	1	0	1	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0020	1	0	0	1	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0021	1	0	0	1	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0022	1	0	0	1	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0023	1	0	0	0	1	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0024	1	0	0	0	0	1	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0025	1	0	0	1	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0026	1	0	1	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0027	1	0	1	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0028	1	1	0	0	0	0	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	g0029	1	1	0	0	0	0	ALG3	chr3	184237301	184253962