JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALKAL1_chr8_52529037_52570430	0/0	g0248	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0249	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0250	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0251	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0252	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0253	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0254	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0255	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0256	1	0	1	0	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0257	1	0	1	0	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0258	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0259	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0260	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0261	1	0	0	0	0	1	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0262	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0263	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0264	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0265	1	1	0	0	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0266	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0267	1	0	1	0	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0268	1	0	1	0	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0269	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0270	1	0	0	0	0	1	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0271	1	0	1	0	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0272	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0273	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0274	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0275	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0276	1	0	0	1	0	0	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	g0277	1	1	0	0	0	0	ALKAL1	chr8	52529037	52570430
ALKAL2_chr2_274558_293091	0/0	g0001	97	9	16	62	2	8	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0002	89	10	18	40	5	16	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/1	g0003	46	20	14	2	1	8	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	1/0	g0004	34	2	7	20	3	1	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0005	10	4	1	3	1	1	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0006	7	0	0	7	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0007	6	0	5	1	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0008	5	2	1	1	1	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0009	5	3	2	0	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0010	4	0	2	2	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0011	4	4	0	0	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0012	4	0	0	4	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0013	4	3	1	0	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0014	3	3	0	0	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0015	3	0	0	3	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0016	3	0	0	0	0	3	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0017	3	0	0	3	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0018	2	2	0	0	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0019	2	2	0	0	0	0	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	g0020	2	2	0	0	0	0	ALKAL2	chr2	274558	293091