JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALKBH2_chr12_109083189_109098472	0/0	g0052	1	0	0	0	0	1	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0053	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0054	1	0	1	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0055	1	0	0	1	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0056	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0057	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0058	1	0	0	1	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0059	1	0	1	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0060	1	0	1	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0061	1	0	0	0	0	1	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0062	1	0	0	1	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0063	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0064	1	0	1	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0065	1	0	0	0	0	1	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0066	1	0	1	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0067	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0068	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0069	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	g0070	1	1	0	0	0	0	ALKBH2	chr12	109083189	109098472
ALKBH3_chr11_43875831_43925274	0/0	g0001	26	0	1	23	0	2	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0002	11	0	0	11	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0003	10	9	1	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0004	9	0	6	1	0	2	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0005	6	0	0	2	0	4	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0006	6	1	0	5	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0007	6	1	0	5	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0008	6	0	1	5	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0009	4	0	3	1	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0010	4	0	1	2	0	1	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0011	4	0	0	4	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0012	4	0	1	3	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0013	4	0	3	0	1	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0014	4	0	3	0	0	1	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0015	4	0	0	4	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0016	4	3	1	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0017	4	0	1	0	0	3	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0018	4	0	0	4	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0019	3	0	3	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0020	3	0	2	0	1	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0021	3	0	0	3	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0022	3	3	0	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0023	3	3	0	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0024	3	3	0	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	1/0	g0025	3	2	0	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0026	3	3	0	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0027	2	0	0	2	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0028	2	1	1	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0029	2	2	0	0	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0030	2	0	0	2	0	0	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	g0031	2	0	0	2	0	0	ALKBH3	chr11	43875831	43925274