JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALKBH4_chr7_102451238_102469863	0/0	g0157	1	0	1	0	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0158	1	0	1	0	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0159	1	1	0	0	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0160	1	0	1	0	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0161	1	0	0	1	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0162	1	0	0	0	0	1	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0163	1	0	0	0	0	1	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0164	1	1	0	0	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0165	1	0	1	0	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0166	1	0	0	1	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0167	1	0	0	1	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0168	1	0	0	0	0	1	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0169	1	0	0	0	0	1	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0170	1	0	1	0	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0171	1	0	0	0	0	1	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0172	1	0	0	1	0	0	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	g0173	1	0	0	1	0	0	ALKBH4	chr7	102451238	102469863
ALKBH5_chr17_18178828_18214954	0/0	g0001	6	0	5	0	1	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0002	6	0	2	4	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0003	5	1	2	1	1	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0004	5	0	0	5	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0005	4	3	1	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0006	4	0	1	0	2	1	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0007	4	0	0	3	0	1	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0008	4	0	0	4	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0009	4	0	0	4	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0010	4	0	0	4	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0011	3	3	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0012	3	0	1	2	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0013	3	3	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0014	3	3	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0015	3	0	0	3	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0016	3	0	0	3	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0017	3	0	3	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0018	3	0	2	0	0	1	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0019	3	0	0	3	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0020	3	0	0	3	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0021	3	3	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0022	3	3	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0023	2	0	1	0	1	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0024	2	1	1	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0025	2	0	1	0	0	1	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0026	2	1	1	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0027	2	2	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0028	2	2	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0029	2	2	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0030	2	0	0	2	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0031	2	0	0	1	0	1	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0032	2	2	0	0	0	0	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	g0033	2	2	0	0	0	0	ALKBH5	chr17	18178828	18214954