JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALKBH6_chr19_36004120_36019213	0/0	g0009	4	4	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0010	3	3	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0011	3	2	1	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0012	3	0	1	0	0	2	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0013	3	3	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0014	3	0	0	3	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0015	2	2	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0016	2	1	1	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0017	2	0	0	0	0	2	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0018	2	0	0	0	2	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0019	2	0	1	0	0	1	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0020	1	0	0	1	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0021	1	0	0	1	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0022	1	1	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0023	1	1	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0024	1	1	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0025	1	1	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0026	1	0	0	0	0	1	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0027	1	0	1	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0028	1	1	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0029	1	0	0	1	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0030	1	0	0	1	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0031	1	0	0	0	1	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0032	1	0	1	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0033	1	1	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0034	1	1	0	0	0	0	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	g0035	1	0	0	1	0	0	ALKBH6	chr19	36004120	36019213
ALKBH7_chr19_6367794_6380250	1/1	g0001	179	11	50	80	13	23	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0002	132	37	12	73	0	10	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0003	33	27	5	1	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0004	5	0	3	0	1	1	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0005	4	0	0	4	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0006	4	4	0	0	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0007	3	3	0	0	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0008	3	0	0	3	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0009	2	2	0	0	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0010	2	2	0	0	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0011	2	2	0	0	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0012	1	1	0	0	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0013	1	1	0	0	0	0	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	g0014	1	0	0	1	0	0	ALKBH7	chr19	6367794	6380250
ALKBH8_chr11_107497727_107570735	0/0	g0001	8	0	2	6	0	0	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0002	7	0	0	6	0	1	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0003	5	0	2	2	0	1	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0004	4	3	1	0	0	0	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0005	4	4	0	0	0	0	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0006	4	0	3	0	1	0	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0007	3	0	0	3	0	0	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0008	3	0	0	2	0	1	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	g0009	3	0	0	3	0	0	ALKBH8	chr11	107497727	107570735