JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALLC_chr2_3653200_3707671	0/0	g0253	1	0	1	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0254	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0255	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0256	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0257	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0258	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0259	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0260	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	g0261	1	1	0	0	0	0	ALLC	chr2	3653200	3707671
ALMS1_chr2_73380836_73614916	0/0	g0001	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0002	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0003	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0004	1	0	0	0	1	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0005	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0006	1	0	0	0	1	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0007	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0008	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0009	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0010	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0011	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0012	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0013	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0014	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0015	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0016	1	0	0	0	0	1	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0017	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0018	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0019	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0020	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0021	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0022	1	0	0	0	0	1	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0023	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0024	1	0	0	0	0	1	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0025	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0026	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0027	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0028	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0029	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0030	1	0	0	1	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0031	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0032	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0033	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0034	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0035	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0036	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0037	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0038	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0039	1	1	0	0	0	0	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0040	1	0	0	0	0	1	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	g0041	1	0	1	0	0	0	ALMS1	chr2	73380836	73614916