JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALOX12_chr17_6991049_7015754	0/0	g0209	1	0	1	0	0	0	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	g0210	1	0	1	0	0	0	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	g0211	1	0	1	0	0	0	ALOX12	chr17	6991049	7015754
ALOX15B_chr17_8034059_8054134	0/0	g0001	11	0	4	5	0	2	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0002	9	0	0	9	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0003	8	0	2	4	0	2	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0004	7	0	5	1	0	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0005	7	1	2	1	3	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0006	7	3	0	4	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0007	6	0	0	6	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0008	6	2	1	2	1	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0009	6	0	3	2	1	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0010	6	0	0	3	0	3	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0011	6	0	3	3	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0012	6	1	0	5	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0013	6	0	1	5	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0014	5	0	0	5	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0015	5	0	0	5	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0016	5	1	2	2	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0017	5	0	0	5	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0018	5	0	2	3	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0019	4	0	0	4	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0020	4	0	1	3	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0021	4	0	1	2	1	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0022	4	1	0	3	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0023	4	0	2	1	1	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0024	4	0	2	1	1	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0025	4	0	3	1	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0026	4	0	1	2	0	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0027	4	0	0	4	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0028	4	0	3	0	1	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0029	3	0	0	3	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0030	3	0	0	2	0	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0031	3	1	1	0	0	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0032	3	0	1	1	0	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0033	3	0	2	0	0	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0034	3	0	3	0	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0035	3	0	0	3	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/1	g0036	3	0	0	0	1	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0037	3	1	0	2	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0038	3	1	1	1	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0039	3	1	1	0	0	1	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0040	3	0	0	1	0	2	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0041	3	3	0	0	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0042	3	3	0	0	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0043	2	0	0	2	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0044	2	0	2	0	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0045	2	0	2	0	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0046	2	0	0	2	0	0	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	g0047	2	0	0	2	0	0	ALOX15B	chr17	8034059	8054134