JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALOXE3_chr17_8090900_8123514	0/0	g0389	1	0	0	1	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0390	1	0	0	1	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0391	1	0	0	1	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0392	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0393	1	0	1	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0394	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0395	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0396	1	0	0	0	0	1	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0397	1	0	0	1	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0398	1	0	1	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0399	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0400	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0401	1	0	0	0	1	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0402	1	0	1	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0403	1	0	1	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0404	1	0	1	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0405	1	0	0	0	0	1	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0406	1	0	1	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0407	1	0	0	0	0	1	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0408	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0409	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0410	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0411	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0412	1	1	0	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0413	1	0	1	0	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0414	1	0	0	1	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0415	1	0	0	1	0	0	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	g0416	1	0	0	0	0	1	ALOXE3	chr17	8090900	8123514
ALPG_chr2_232401844_232415714	1/0	g0001	174	33	31	82	8	19	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0002	66	19	13	22	4	8	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0003	57	11	11	32	0	3	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0004	49	3	4	37	2	3	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0005	39	4	13	15	2	5	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0006	10	0	0	1	2	7	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0007	5	5	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0008	5	5	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0009	4	4	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0010	4	4	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0011	2	2	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0012	2	2	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0013	1	0	1	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0014	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0015	1	0	1	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0016	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0017	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0018	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0019	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0020	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0021	1	0	0	0	0	1	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0022	1	0	0	1	0	0	ALPG	chr2	232401844	232415714