JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALPG_chr2_232401844_232415714	0/0	g0023	1	1	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/1	g0024	1	0	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0025	1	1	0	0	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0026	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0027	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0028	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	g0029	1	0	0	1	0	0	ALPG	chr2	232401844	232415714
ALPI_chr2_232451153_232465753	0/1	g0001	220	44	36	108	9	22	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	1/0	g0002	93	25	11	39	4	13	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0003	42	5	13	18	0	6	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0004	32	0	1	28	1	2	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0005	25	3	11	6	3	2	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0006	6	6	0	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0007	5	4	1	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0008	5	5	0	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0009	5	0	0	5	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0010	3	3	0	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0011	2	0	0	0	0	2	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0012	2	0	2	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0013	1	0	1	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0014	1	1	0	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0015	1	1	0	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0016	1	1	0	0	0	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0017	1	0	0	0	1	0	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	g0018	1	0	0	0	0	1	ALPI	chr2	232451153	232465753
ALPK1_chr4_112292369_112447621	0/0	g0001	2	0	0	0	0	2	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0002	2	0	0	0	0	2	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0003	2	0	2	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0004	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0005	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0006	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0007	1	0	0	0	0	1	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0008	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0009	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0010	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0011	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0012	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0013	1	0	1	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0014	1	0	0	1	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0015	1	0	0	1	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0016	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0017	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0018	1	1	0	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0019	1	0	0	1	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0020	1	0	0	1	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0021	1	0	1	0	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0022	1	0	0	0	0	1	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0023	1	0	0	0	0	1	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0024	1	0	0	1	0	0	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	g0025	1	0	0	1	0	0	ALPK1	chr4	112292369	112447621