JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALPK3_chr15_84812356_84878479	0/0	g0253	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0254	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0255	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0256	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0257	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0258	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0259	1	0	0	0	1	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0260	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0261	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0262	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0263	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0264	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0265	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0266	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0267	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	1/0	g0268	1	0	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0269	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0270	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0271	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0272	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0273	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0274	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0275	1	0	0	0	0	1	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0276	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0277	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0278	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0279	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0280	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0281	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0282	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0283	1	0	0	1	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0284	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0285	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0286	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0287	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0288	1	0	1	0	0	0	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	g0289	1	1	0	0	0	0	ALPK3	chr15	84812356	84878479
ALPL_chr1_21504423_21583410	0/0	g0001	2	0	0	0	0	2	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0002	2	2	0	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0003	2	0	2	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0004	1	0	1	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0005	1	0	0	0	0	1	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0006	1	0	0	0	0	1	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0007	1	0	1	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0008	1	0	1	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0009	1	0	1	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0010	1	0	1	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0011	1	0	1	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0012	1	0	1	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0013	1	0	1	0	0	0	ALPL	chr1	21504423	21583410