JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALPL_chr1_21504423_21583410	0/0	g0364	1	1	0	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0365	1	1	0	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0366	1	1	0	0	0	0	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	g0367	1	1	0	0	0	0	ALPL	chr1	21504423	21583410
ALPP_chr2_232373751_232387889	0/0	g0001	155	21	30	79	6	19	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/1	g0002	65	22	13	19	3	7	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0003	42	6	2	28	2	4	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0004	33	5	7	14	1	6	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	1/0	g0005	14	0	3	4	2	4	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0006	11	0	1	10	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0007	10	0	0	9	0	1	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0008	10	9	1	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0009	9	0	4	4	0	1	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0010	7	2	0	5	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0011	7	7	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0012	7	2	1	4	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0013	5	0	0	5	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0014	4	4	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0015	4	4	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0016	2	0	1	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0017	2	0	2	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0018	2	0	0	0	1	1	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0019	2	0	0	0	0	2	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0020	2	2	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0021	2	2	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0022	2	2	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0023	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0024	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0025	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0026	1	1	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0027	1	0	1	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0028	1	0	0	0	0	1	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0029	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0030	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0031	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0032	1	0	0	0	1	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0033	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0034	1	1	0	0	0	0	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	g0035	1	0	0	1	0	0	ALPP	chr2	232373751	232387889
ALS2CL_chr3_46663995_46698679	0/0	g0001	26	0	13	9	2	2	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0002	20	4	6	7	0	3	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0003	18	0	4	8	1	5	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0004	13	12	1	0	0	0	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0005	11	0	3	4	0	4	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0006	9	1	0	5	0	3	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0007	7	0	5	0	2	0	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0008	7	0	0	7	0	0	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0009	6	0	0	6	0	0	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0010	6	0	0	6	0	0	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	g0011	6	0	5	0	1	0	ALS2CL	chr3	46663995	46698679