JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALX1_chr12_85275220_85306784	0/0	g0116	1	1	0	0	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0117	1	0	0	0	0	1	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0118	1	0	1	0	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0119	1	0	0	0	1	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0120	1	0	0	0	0	1	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0121	1	0	0	0	0	1	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0122	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0123	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0124	1	0	0	0	0	1	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0125	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0126	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0127	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0128	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0129	1	0	0	0	0	1	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0130	1	0	1	0	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0131	1	0	0	0	1	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0132	1	0	0	0	0	1	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0133	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0134	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0135	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0136	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0137	1	0	1	0	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0138	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0139	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0140	1	0	0	0	0	1	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0141	1	0	1	0	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0142	1	0	0	1	0	0	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	g0143	1	1	0	0	0	0	ALX1	chr12	85275220	85306784
ALX3_chr1_110054870_110075672	0/0	g0001	33	2	10	14	3	4	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0002	21	0	0	17	2	2	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0003	14	2	3	8	0	1	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0004	12	11	1	0	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0005	12	2	4	5	0	1	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0006	12	0	0	12	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0007	10	7	0	3	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0008	9	5	2	2	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0009	8	0	1	7	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/1	g0010	7	0	3	2	1	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0011	7	0	0	6	0	1	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0012	7	1	0	6	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0013	7	0	6	1	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0014	6	0	3	2	0	1	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0015	6	0	0	6	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0016	6	0	0	6	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0017	6	0	0	6	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0018	5	0	4	0	0	1	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0019	5	0	0	4	0	1	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0020	5	1	0	4	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0021	5	0	0	5	0	0	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	g0022	4	0	2	0	1	1	ALX3	chr1	110054870	110075672