JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALYREF_chr17_81882835_81896586	0/0	g0011	3	0	0	3	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0012	2	2	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0013	2	2	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0014	2	2	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0015	2	2	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0016	2	0	0	2	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0017	1	1	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0018	1	1	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0019	1	0	0	1	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0020	1	0	1	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0021	1	0	0	1	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0022	1	0	0	0	0	1	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0023	1	0	0	0	0	1	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0024	1	0	0	1	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0025	1	0	0	0	0	1	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0026	1	0	0	1	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0027	1	0	0	0	0	1	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0028	1	0	0	1	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0029	1	0	0	1	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0030	1	1	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0031	1	1	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0032	1	1	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0033	1	1	0	0	0	0	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	g0034	1	1	0	0	0	0	ALYREF	chr17	81882835	81896586
AMACR_chr5_33981165_34013050	0/0	g0001	28	0	7	18	0	3	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0002	21	1	8	11	1	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0003	20	0	2	18	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0004	16	0	0	12	0	4	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0005	15	3	9	0	0	3	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0006	12	0	2	9	1	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0007	11	0	0	11	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0008	11	0	0	11	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0009	11	0	0	6	0	5	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0010	10	0	0	10	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0011	7	0	4	0	1	2	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0012	5	0	0	5	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0013	5	0	2	3	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0014	5	0	3	0	1	1	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0015	5	0	0	5	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0016	5	0	0	0	0	5	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0017	4	3	1	0	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/1	g0018	4	0	1	0	0	2	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0019	4	4	0	0	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0020	4	0	0	3	0	1	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0021	4	4	0	0	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0022	3	0	0	3	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0023	3	0	0	3	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0024	3	0	3	0	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0025	3	0	3	0	0	0	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	g0026	3	0	3	0	0	0	AMACR	chr5	33981165	34013050