JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMBRA1_chr11_46391414_46599023	0/0	g0132	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0133	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0134	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0135	1	0	1	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0136	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0137	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0138	1	0	0	0	0	1	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0139	1	0	0	1	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0140	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0141	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0142	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0143	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0144	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0145	1	0	1	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0146	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0147	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0148	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0149	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0150	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0151	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0152	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0153	1	0	1	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0154	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0155	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0156	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0157	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0158	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0159	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	g0160	1	1	0	0	0	0	AMBRA1	chr11	46391414	46599023
AMD1_chr6_110869785_110900713	0/0	g0001	43	0	2	34	1	6	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0002	35	1	1	31	0	2	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0003	33	0	6	22	0	5	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0004	31	0	7	16	1	7	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0005	18	4	10	0	2	2	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0006	12	1	0	10	0	1	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0007	9	8	1	0	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0008	8	7	1	0	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0009	7	0	0	7	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0010	7	0	4	0	1	2	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0011	7	7	0	0	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0012	6	0	0	5	0	1	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0013	5	0	3	0	0	2	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0014	5	5	0	0	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0015	5	4	1	0	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0016	4	0	0	4	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0017	4	0	4	0	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0018	4	0	0	4	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0019	4	4	0	0	0	0	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0020	3	0	1	0	1	1	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	g0021	3	0	3	0	0	0	AMD1	chr6	110869785	110900713