JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMDHD1_chr12_95938331_95973720	0/0	g0294	1	0	1	0	0	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0295	1	0	0	0	0	1	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0296	1	0	1	0	0	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0297	1	0	1	0	0	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0298	1	0	0	0	1	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0299	1	0	1	0	0	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0300	1	0	0	1	0	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0301	1	0	1	0	0	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0302	1	0	0	0	0	1	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0303	1	0	0	1	0	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0304	1	0	0	0	1	0	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	g0305	1	0	0	0	1	0	AMDHD1	chr12	95938331	95973720
AMDHD2_chr16_2515371_2536417	1/1	g0001	96	21	19	37	5	12	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0002	30	11	10	6	0	3	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0003	27	0	5	16	0	6	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0004	13	0	0	13	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0005	10	0	0	10	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0006	9	9	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0007	7	5	2	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0008	6	0	4	0	0	2	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0009	6	6	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0010	5	0	1	4	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0011	4	0	2	2	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0012	4	0	0	0	0	4	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0013	4	0	0	4	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0014	3	0	3	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0015	3	1	2	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0016	3	3	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0017	3	0	0	3	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0018	3	0	0	3	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0019	2	0	0	2	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0020	2	0	0	2	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0021	2	1	0	0	0	1	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0022	2	0	0	2	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0023	2	0	2	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0024	2	2	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0025	2	0	0	2	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0026	2	1	1	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0027	2	0	2	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0028	2	2	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0029	2	2	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0030	2	2	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0031	1	0	1	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0032	1	1	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0033	1	0	1	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0034	1	0	1	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0035	1	1	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0036	1	1	0	0	0	0	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0037	1	0	0	0	0	1	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	g0038	1	0	0	1	0	0	AMDHD2	chr16	2515371	2536417