JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMELX_chrX_11288413_11305761	0/0	g0001	118	19	26	65	2	6	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	1/0	g0002	72	10	8	41	3	9	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0003	19	15	4	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0004	16	6	1	3	3	3	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/1	g0005	14	2	4	0	2	5	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0006	6	0	3	3	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0007	5	5	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0008	5	5	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0009	4	0	0	4	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0010	4	3	1	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0011	3	3	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0012	3	0	0	0	0	3	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0013	2	2	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0014	2	0	2	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0015	1	0	1	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0016	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0017	1	0	1	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0018	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0019	1	0	1	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0020	1	0	0	0	0	1	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0021	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0022	1	0	0	0	1	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0023	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0024	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0025	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0026	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0027	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0028	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0029	1	0	0	0	0	1	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0030	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0031	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0032	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0033	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0034	1	0	0	1	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0035	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0036	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0037	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0038	1	0	0	0	0	1	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0039	1	0	1	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0040	1	0	1	0	0	0	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	g0041	1	1	0	0	0	0	AMELX	chrX	11288413	11305761
AMELY_chrY_6860918_6916752	0/0	g0001	15	0	0	15	0	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	g0002	6	6	0	0	0	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	g0003	4	0	0	4	0	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	g0004	3	0	0	3	0	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	1/0	g0005	3	0	1	0	1	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	g0006	3	0	0	3	0	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	g0007	3	0	0	3	0	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	g0008	2	0	2	0	0	0	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	g0009	2	1	1	0	0	0	AMELY	chrY	6860918	6916752