JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMER1_chrX_64180117_64210708	0/0	g0163	1	1	0	0	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0164	1	1	0	0	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0165	1	0	0	1	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0166	1	0	0	1	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0167	1	0	1	0	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0168	1	0	1	0	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0169	1	0	1	0	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0170	1	0	0	1	0	0	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	g0171	1	1	0	0	0	0	AMER1	chrX	64180117	64210708
AMER2_chr13_25156679_25177288	1/1	g0000	416	92	76	188	14	44	AMER2	chr13	25156679	25177288
AMER3_chr2_130750540_130773134	1/0	g0001	181	31	48	66	15	20	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0002	35	0	9	22	0	4	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0003	26	2	0	15	0	9	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0004	25	0	2	22	0	1	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0005	10	10	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0006	6	5	0	0	0	1	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0007	5	3	2	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0008	4	0	1	3	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0009	4	0	1	2	0	1	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0010	3	0	0	3	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0011	3	0	0	3	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0012	3	3	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0013	3	3	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0014	2	2	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0015	2	2	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0016	2	0	0	0	0	2	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0017	2	0	0	0	2	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0018	2	0	2	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0019	2	0	0	2	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0020	2	0	0	2	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0021	2	0	0	2	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0022	2	0	2	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0023	1	0	0	1	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0024	1	1	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0025	1	0	1	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0026	1	0	1	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0027	1	1	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0028	1	1	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0029	1	0	0	1	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0030	1	1	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0031	1	0	0	0	0	1	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0032	1	1	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0033	1	0	0	0	1	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0034	1	0	1	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0035	1	0	1	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/1	g0036	1	0	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0037	1	1	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0038	1	1	0	0	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0039	1	0	0	1	0	0	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	g0040	1	0	0	1	0	0	AMER3	chr2	130750540	130773134