JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMFR_chr16_56356452_56430545	0/0	g0335	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0336	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0337	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0338	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0339	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0340	1	0	0	0	0	1	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0341	1	0	0	0	0	1	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0342	1	0	0	0	0	1	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0343	1	1	0	0	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0344	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0345	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0346	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0347	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0348	1	1	0	0	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0349	1	0	0	0	0	1	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0350	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0351	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0352	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0353	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0354	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	g0355	1	0	0	1	0	0	AMFR	chr16	56356452	56430545
AMHR2_chr12_53418855_53436672	1/0	g0001	156	13	31	80	7	24	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0002	27	26	1	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0003	24	3	1	17	1	2	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0004	21	1	7	13	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0005	10	0	3	4	0	3	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0006	10	0	0	10	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0007	8	3	1	2	0	2	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0008	7	7	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0009	5	0	4	0	1	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0010	4	0	0	3	0	1	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0011	4	4	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0012	4	4	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0013	4	0	0	4	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0014	4	0	0	4	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0015	4	2	1	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0016	3	3	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0017	3	0	0	0	0	3	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0018	3	3	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0019	3	1	2	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0020	2	1	1	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0021	2	0	0	2	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0022	2	0	0	2	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0023	2	0	0	2	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0024	2	2	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0025	2	0	0	2	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0026	2	0	0	2	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0027	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0028	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0029	1	0	0	0	0	1	AMHR2	chr12	53418855	53436672