JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMHR2_chr12_53418855_53436672	0/0	g0030	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0031	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0032	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0033	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0034	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0035	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0036	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0037	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0038	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0039	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0040	1	0	0	0	0	1	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0041	1	0	1	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0042	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0043	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0044	1	0	1	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0045	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0046	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0047	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0048	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0049	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/1	g0050	1	0	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0051	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0052	1	0	0	0	0	1	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0053	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0054	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0055	1	0	0	0	0	1	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0056	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0057	1	0	0	0	0	1	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0058	1	0	0	0	1	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0059	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0060	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0061	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0062	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0063	1	0	0	1	0	0	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	g0064	1	1	0	0	0	0	AMHR2	chr12	53418855	53436672
AMH_chr19_2244323_2257073	1/0	g0001	198	50	34	92	4	17	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/1	g0002	167	32	37	65	8	24	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0003	32	2	8	13	5	4	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0004	7	0	0	7	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0005	7	6	1	0	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0006	5	0	0	5	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0007	2	0	0	2	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0008	1	0	0	1	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0009	1	1	0	0	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0010	1	0	0	1	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0011	1	0	0	1	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0012	1	0	0	1	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0013	1	1	0	0	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0014	1	1	0	0	0	0	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	g0015	1	0	0	1	0	0	AMH	chr19	2244323	2257073