JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMIGO2_chr12_47071447_47084959	0/0	g0009	6	6	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0010	6	6	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0011	5	3	2	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0012	3	3	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0013	2	0	0	2	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0014	2	0	2	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0015	2	2	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	1/0	g0016	2	0	0	0	0	1	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0017	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0018	1	0	1	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0019	1	0	1	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0020	1	0	0	0	0	1	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0021	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0022	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0023	1	0	0	1	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0024	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0025	1	0	0	1	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0026	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0027	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0028	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0029	1	0	0	1	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0030	1	0	0	0	0	1	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0031	1	1	0	0	0	0	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	g0032	1	0	0	1	0	0	AMIGO2	chr12	47071447	47084959
AMIGO3_chr3_49711829_49724684	1/1	g0000	334	90	68	124	18	32	AMIGO3	chr3	49711829	49724684
AMMECR1L_chr2_127856630_127890956	0/0	g0001	37	0	3	32	1	1	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0002	15	0	6	9	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/1	g0003	10	0	6	3	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0004	9	9	0	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0005	7	0	0	4	0	3	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0006	7	0	0	6	0	1	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0007	7	0	3	3	0	1	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0008	5	2	1	0	2	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0009	5	0	1	4	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0010	4	4	0	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0011	4	4	0	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0012	4	0	4	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0013	4	1	3	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0014	3	2	1	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0015	3	2	1	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0016	3	0	1	1	0	1	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0017	3	1	1	1	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0018	3	0	0	3	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0019	2	2	0	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0020	2	2	0	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0021	2	0	1	0	0	1	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0022	2	0	1	0	1	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0023	2	0	2	0	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0024	2	0	0	2	0	0	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	g0025	2	0	0	0	0	2	AMMECR1L	chr2	127856630	127890956