JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMN1_chr12_31666142_31734021	0/0	g0389	1	1	0	0	0	0	AMN1	chr12	31666142	31734021
AMN_chr14_102917663_102935842	0/0	g0001	105	25	16	47	6	11	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	1/1	g0002	80	7	19	38	2	12	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0003	21	2	5	6	4	4	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0004	12	0	4	7	0	1	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0005	11	9	2	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0006	11	0	0	10	0	1	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0007	11	0	0	11	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0008	9	5	2	0	0	2	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0009	8	0	0	8	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0010	8	0	3	1	1	3	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0011	6	0	2	4	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0012	6	0	4	0	0	2	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0013	5	0	4	1	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0014	5	4	0	1	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0015	5	5	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0016	5	5	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0017	4	0	0	4	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0018	4	0	0	4	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0019	4	0	0	4	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0020	3	0	0	3	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0021	3	3	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0022	3	0	3	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0023	3	0	1	0	2	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0024	3	3	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0025	3	0	0	3	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0026	3	3	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0027	3	0	0	3	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0028	2	0	0	2	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0029	2	2	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0030	2	0	2	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0031	2	0	2	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0032	2	0	0	0	0	2	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0033	2	0	0	1	1	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0034	2	0	0	2	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0035	2	0	0	2	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0036	2	2	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0037	2	2	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0038	2	1	1	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0039	2	2	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0040	2	2	0	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0041	2	0	0	2	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0042	2	0	2	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0043	2	0	0	2	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0044	2	1	1	0	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0045	2	0	0	1	0	1	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0046	2	0	0	1	0	1	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0047	1	0	0	1	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0048	1	0	0	1	0	0	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	g0049	1	1	0	0	0	0	AMN	chr14	102917663	102935842