JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMTN_chr4_70513569_70537743	0/0	g0004	19	1	1	14	0	3	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0005	19	0	1	17	1	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0006	12	9	3	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0007	12	0	3	9	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0008	9	2	0	7	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0009	9	0	0	8	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0010	7	0	1	6	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0011	6	3	2	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0012	6	0	0	6	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0013	6	0	0	6	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0014	6	2	0	2	0	2	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0015	5	0	1	3	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0016	5	0	0	5	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0017	4	4	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0018	4	0	0	2	0	2	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0019	4	0	0	2	1	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0020	4	4	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	1/0	g0021	4	0	1	0	2	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0022	3	3	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0023	3	3	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0024	3	0	0	2	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0025	3	0	0	3	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0026	3	0	0	0	1	2	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0027	3	0	2	0	1	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0028	3	3	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0029	3	3	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0030	3	3	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0031	3	0	0	3	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0032	3	0	1	2	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0033	3	0	0	3	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0034	3	0	2	0	1	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0035	3	2	1	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0036	3	0	2	0	1	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0037	3	0	0	3	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0038	2	2	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0039	2	2	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0040	2	0	0	2	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0041	2	2	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0042	2	0	0	0	0	2	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0043	2	0	1	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0044	2	0	0	2	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0045	2	0	0	0	1	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0046	2	2	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0047	2	0	0	2	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0048	2	0	0	2	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0049	2	0	1	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0050	2	0	1	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0051	2	2	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0052	2	0	0	1	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0053	2	0	0	2	0	0	AMTN	chr4	70513569	70537743