JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMTN_chr4_70513569_70537743	0/0	g0104	1	0	1	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0105	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0106	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0107	1	0	1	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0108	1	0	0	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0109	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0110	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0111	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0112	1	0	0	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0113	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0114	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0115	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0116	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0117	1	0	0	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0118	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0119	1	0	0	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0120	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0121	1	0	0	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0122	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0123	1	0	1	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0124	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0125	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0126	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0127	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0128	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0129	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0130	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0131	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0132	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0133	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0134	1	0	0	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0135	1	0	1	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0136	1	0	1	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0137	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0138	1	0	0	0	1	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0139	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0140	1	0	0	0	0	1	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0141	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0142	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0143	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0144	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0145	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0146	1	0	0	1	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0147	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0148	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	g0149	1	1	0	0	0	0	AMTN	chr4	70513569	70537743
AMT_chr3_49411778_49427473	0/1	g0001	142	8	28	84	3	18	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0002	52	16	12	11	6	7	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	1/0	g0003	34	20	8	0	3	2	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	g0004	29	4	5	17	0	3	AMT	chr3	49411778	49427473