JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMY1B_chr1_103682415_103701210	0/0	g0070	1	1	0	0	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0071	1	1	0	0	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0072	1	1	0	0	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0073	1	1	0	0	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0074	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0075	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0076	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0077	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0078	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0079	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0080	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0081	1	0	1	0	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0082	1	0	0	0	0	1	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0083	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0084	1	1	0	0	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0085	1	0	0	0	0	1	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0086	1	0	0	1	0	0	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	g0087	1	1	0	0	0	0	AMY1B	chr1	103682415	103701210
AMY1C_chr1_103744898_103763692	0/0	g0001	54	4	17	28	1	4	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0002	26	3	3	9	1	10	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0003	20	1	7	6	0	6	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0004	17	0	5	10	0	2	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0005	12	0	0	12	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0006	11	2	3	6	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0007	9	8	1	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0008	8	0	0	8	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0009	6	0	4	0	1	1	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0010	5	5	0	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0011	5	1	2	0	0	2	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0012	5	5	0	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0013	4	0	1	1	0	2	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0014	4	0	0	4	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0015	4	0	0	4	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0016	4	4	0	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0017	3	0	1	2	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0018	3	1	1	0	1	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0019	3	3	0	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0020	3	0	0	3	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0021	3	0	0	1	2	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0022	3	2	1	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0023	3	1	1	0	0	1	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0024	3	0	0	3	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0025	3	0	0	0	0	3	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0026	2	2	0	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0027	2	0	0	2	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0028	2	2	0	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0029	2	0	0	0	0	2	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0030	2	0	0	2	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0031	2	2	0	0	0	0	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	g0032	2	0	2	0	0	0	AMY1C	chr1	103744898	103763692