JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMY2A_chr1_103612427_103630780	0/0	g0058	1	1	0	0	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0059	1	0	0	1	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0060	1	1	0	0	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0061	1	1	0	0	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0062	1	1	0	0	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0063	1	0	0	1	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0064	1	0	0	0	1	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0065	1	0	0	1	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0066	1	0	0	1	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0067	1	0	0	1	0	0	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	g0068	1	0	0	0	0	1	AMY2A	chr1	103612427	103630780
AMY2B_chr1_103566589_103584534	1/1	g0001	64	1	14	39	4	4	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0002	63	4	9	33	0	17	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0003	51	3	3	39	1	5	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0004	36	2	5	21	2	6	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0005	21	7	10	0	2	2	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0006	13	7	4	0	0	2	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0007	11	0	4	7	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0008	10	10	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0009	10	10	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0010	8	0	0	8	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0011	7	7	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0012	7	0	7	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0013	7	0	0	7	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0014	6	0	0	6	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0015	5	0	5	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0016	4	0	0	4	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0017	4	4	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0018	3	3	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0019	3	3	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0020	3	0	1	1	0	1	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0021	3	3	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0022	3	0	0	3	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0023	3	3	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0024	2	2	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0025	2	0	0	2	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0026	2	2	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0027	2	2	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0028	2	0	1	0	0	1	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0029	2	0	2	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0030	2	0	0	0	0	2	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0031	2	0	1	0	1	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0032	1	1	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0033	1	1	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0034	1	0	0	0	1	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0035	1	1	0	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0036	1	0	1	0	0	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0037	1	0	0	0	0	1	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0038	1	0	0	0	1	0	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	g0039	1	0	0	1	0	0	AMY2B	chr1	103566589	103584534