JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AMZ1_chr7_2683202_2724683	0/0	g0412	1	0	0	1	0	0	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	g0413	1	0	0	1	0	0	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	g0414	1	0	1	0	0	0	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	g0415	1	0	0	1	0	0	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	g0416	1	0	0	0	0	1	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	g0417	1	0	0	1	0	0	AMZ1	chr7	2683202	2724683
AMZ2_chr17_68243043_68262155	0/0	g0001	81	3	14	50	2	12	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0002	64	11	17	22	4	10	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/1	g0003	53	11	9	25	3	4	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0004	47	8	9	25	0	5	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0005	45	2	0	36	1	6	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0006	29	1	5	18	0	5	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0007	13	0	9	0	1	3	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	1/0	g0008	10	0	5	1	0	3	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0009	7	7	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0010	6	5	1	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0011	6	4	2	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0012	5	4	1	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0013	5	0	0	5	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0014	4	0	2	0	2	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0015	3	1	2	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0016	3	3	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0017	3	3	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0018	3	3	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0019	3	3	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0020	2	1	1	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0021	2	2	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0022	2	0	0	0	2	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0023	2	0	0	2	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0024	2	0	0	2	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0025	2	0	0	2	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0026	2	2	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0027	2	2	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0028	2	0	2	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0029	1	0	0	0	1	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0030	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0031	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0032	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0033	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0034	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0035	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0036	1	0	0	1	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0037	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0038	1	0	0	0	0	1	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0039	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0040	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0041	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0042	1	1	0	0	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0043	1	0	0	1	0	0	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	g0044	1	0	0	1	0	0	AMZ2	chr17	68243043	68262155