JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANAPC11_chr17_81886723_81905255	0/0	g0101	1	0	0	1	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0102	1	0	0	0	0	1	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0103	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0104	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0105	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0106	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0107	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0108	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0109	1	0	1	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0110	1	0	1	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0111	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0112	1	0	1	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0113	1	1	0	0	0	0	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	g0114	1	0	0	1	0	0	ANAPC11	chr17	81886723	81905255
ANAPC13_chr3_134472706_134490985	1/0	g0001	88	25	10	34	0	18	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/1	g0002	77	4	15	53	2	2	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0003	63	13	12	28	3	7	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0004	42	16	6	5	2	13	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0005	20	0	5	15	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0006	11	9	2	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0007	9	2	5	0	2	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0008	6	0	0	6	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0009	5	0	3	0	0	2	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0010	4	0	0	4	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0011	4	0	2	0	2	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0012	4	4	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0013	4	3	1	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0014	3	3	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0015	3	3	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0016	3	0	3	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0017	2	0	0	2	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0018	2	2	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0019	2	0	1	0	1	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0020	2	0	0	2	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0021	2	0	0	2	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0022	2	0	0	2	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0023	2	0	2	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0024	2	0	1	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0025	2	0	1	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0026	2	2	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0027	2	0	0	0	0	2	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0028	1	1	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0029	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0030	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0031	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0032	1	0	0	0	1	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0033	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0034	1	0	0	0	1	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0035	1	0	1	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0036	1	1	0	0	0	0	ANAPC13	chr3	134472706	134490985