JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANAPC13_chr3_134472706_134490985	0/0	g0037	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0038	1	0	1	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0039	1	0	1	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0040	1	0	0	0	0	1	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0041	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0042	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0043	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0044	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0045	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0046	1	0	1	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0047	1	1	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0048	1	0	1	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0049	1	0	0	0	0	1	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0050	1	1	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0051	1	0	0	1	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0052	1	1	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	g0053	1	1	0	0	0	0	ANAPC13	chr3	134472706	134490985
ANAPC15_chr11_72104587_72117695	1/1	g0001	251	29	56	123	7	34	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0002	60	7	10	38	1	4	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0003	36	35	1	0	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0004	20	5	2	6	0	7	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0005	9	0	0	9	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0006	7	6	1	0	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0007	6	6	0	0	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0008	4	1	2	0	0	1	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0009	2	0	0	2	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0010	2	0	0	2	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0011	2	2	0	0	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0012	1	0	0	0	1	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0013	1	1	0	0	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0014	1	1	0	0	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0015	1	0	0	1	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0016	1	0	0	1	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0017	1	0	0	1	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0018	1	0	0	1	0	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0019	1	0	0	0	1	0	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	g0020	1	1	0	0	0	0	ANAPC15	chr11	72104587	72117695
ANAPC16_chr10_72211012_72240860	0/0	g0001	3	0	0	3	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0002	3	0	2	0	0	1	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0003	2	2	0	0	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0004	2	2	0	0	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0005	2	0	0	2	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0006	2	0	0	2	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0007	2	2	0	0	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0008	2	0	2	0	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0009	2	0	0	2	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0010	2	1	1	0	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0011	2	2	0	0	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0012	1	1	0	0	0	0	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	g0013	1	1	0	0	0	0	ANAPC16	chr10	72211012	72240860