JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANAPC2_chr9_137169784_137193560	0/0	g0160	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0161	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0162	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0163	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0164	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0165	1	0	1	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0166	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0167	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0168	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0169	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0170	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0171	1	0	0	1	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0172	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0173	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0174	1	0	0	0	1	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0175	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0176	1	0	0	1	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0177	1	0	1	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0178	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0179	1	0	0	1	0	0	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0180	1	0	0	0	0	1	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	g0181	1	1	0	0	0	0	ANAPC2	chr9	137169784	137193560
ANAPC4_chr4_25372263_25423498	0/1	g0001	37	0	12	15	5	4	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0002	15	0	2	9	2	2	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0003	10	0	6	0	1	3	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0004	10	0	1	8	0	1	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0005	8	0	0	7	0	1	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0006	8	0	0	8	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0007	6	0	6	0	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0008	6	6	0	0	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0009	6	0	0	6	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0010	6	0	0	6	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0011	6	0	0	6	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0012	5	0	0	5	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0013	5	0	1	1	1	2	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0014	5	0	0	5	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0015	5	0	2	3	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0016	5	5	0	0	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0017	5	3	2	0	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0018	4	1	2	0	0	1	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0019	4	0	0	4	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0020	4	0	0	4	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0021	4	4	0	0	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	1/0	g0022	3	0	1	0	0	1	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0023	3	0	0	3	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0024	3	0	0	3	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0025	3	0	0	3	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0026	3	0	0	3	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0027	3	0	0	3	0	0	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	g0028	3	1	0	2	0	0	ANAPC4	chr4	25372263	25423498