JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANGEL1_chr14_76781009_76817882	0/0	g0286	1	0	1	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0287	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0288	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0289	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0290	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0291	1	0	0	0	1	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0292	1	0	0	0	1	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0293	1	0	0	1	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0294	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0295	1	0	0	1	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0296	1	0	0	1	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0297	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0298	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0299	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0300	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0301	1	0	0	0	1	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0302	1	0	0	0	0	1	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0303	1	0	0	0	1	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0304	1	0	0	1	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0305	1	0	0	1	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0306	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0307	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	1/0	g0308	1	0	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0309	1	0	0	0	0	1	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0310	1	0	1	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0311	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0312	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	g0313	1	1	0	0	0	0	ANGEL1	chr14	76781009	76817882
ANGEL2_chr1_212987182_213020867	0/0	g0001	23	1	4	12	2	4	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0002	22	0	1	20	0	1	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0003	12	0	1	11	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0004	6	0	6	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0005	6	6	0	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0006	5	4	1	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0007	4	3	1	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0008	3	0	0	3	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0009	3	3	0	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0010	3	0	1	2	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0011	3	0	0	3	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0012	3	0	1	2	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0013	3	0	0	2	0	1	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0014	3	0	0	2	1	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0015	3	0	0	3	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0016	3	1	2	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0017	3	0	0	3	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0018	3	3	0	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0019	3	2	1	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0020	3	3	0	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0021	2	0	2	0	0	0	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	g0022	2	2	0	0	0	0	ANGEL2	chr1	212987182	213020867