JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANGPT2_chr8_6494632_6568245	0/0	g0315	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0316	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0317	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0318	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0319	1	0	0	1	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0320	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0321	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0322	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0323	1	0	1	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0324	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0325	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0326	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0327	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0328	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0329	1	0	1	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0330	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0331	1	0	1	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0332	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0333	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0334	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	g0335	1	1	0	0	0	0	ANGPT2	chr8	6494632	6568245
ANGPT4_chr20_864900_921334	0/0	g0001	3	0	3	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0002	3	0	0	3	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0003	2	0	0	0	2	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0004	2	0	2	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0005	2	0	2	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0006	2	2	0	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0007	2	1	1	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0008	2	0	0	0	0	2	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0009	2	0	2	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0010	2	0	0	2	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0011	2	0	0	0	0	2	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0012	2	0	0	2	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0013	2	0	0	2	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0014	2	0	0	2	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0015	2	0	0	2	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0016	2	0	0	2	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0017	2	0	0	0	1	1	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0018	2	0	2	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0019	1	0	1	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0020	1	0	0	1	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0021	1	0	0	1	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0022	1	0	0	1	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0023	1	0	0	1	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0024	1	0	0	1	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0025	1	0	0	0	0	1	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0026	1	0	0	1	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0027	1	0	0	1	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0028	1	0	1	0	0	0	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	g0029	1	0	0	1	0	0	ANGPT4	chr20	864900	921334