JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANGPTL3_chr1_62592520_62611313	0/0	g0017	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0018	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0019	1	1	0	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0020	1	1	0	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0021	1	0	1	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0022	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0023	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0024	1	0	0	0	1	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0025	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0026	1	1	0	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0027	1	1	0	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0028	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0029	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0030	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0031	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0032	1	1	0	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0033	1	0	1	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0034	1	1	0	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0035	1	0	0	1	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	g0036	1	1	0	0	0	0	ANGPTL3	chr1	62592520	62611313
ANGPTL4_chr19_8359155_8379370	1/1	g0001	82	5	10	53	2	10	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0002	45	8	6	26	2	3	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0003	31	2	5	16	2	6	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0004	25	0	6	11	3	5	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0005	17	0	8	8	0	1	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0006	11	4	4	0	0	3	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0007	9	0	5	0	1	3	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0008	9	9	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0009	8	0	8	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0010	7	7	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0011	7	7	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0012	7	1	5	0	0	1	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0013	5	5	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0014	5	0	0	4	1	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0015	4	0	0	4	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0016	4	3	1	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0017	4	4	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0018	4	0	1	3	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0019	4	4	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0020	3	0	2	1	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0021	3	3	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0022	3	0	1	2	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0023	3	2	0	0	0	1	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0024	3	3	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0025	2	0	1	1	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0026	2	0	0	2	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0027	2	2	0	0	0	0	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0028	2	0	0	0	0	2	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0029	2	0	0	0	1	1	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	g0030	2	0	0	0	0	2	ANGPTL4	chr19	8359155	8379370