JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANGPTL6_chr19_10087338_10107678	0/0	g0162	1	0	1	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0163	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0164	1	0	1	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0165	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0166	1	1	0	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0167	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0168	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0169	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0170	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0171	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0172	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0173	1	0	1	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0174	1	0	0	1	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0175	1	1	0	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0176	1	1	0	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0177	1	1	0	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0178	1	1	0	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0179	1	0	1	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0180	1	0	1	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0181	1	1	0	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0182	1	1	0	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0183	1	0	1	0	0	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0184	1	0	0	0	0	1	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0185	1	0	0	0	0	1	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0186	1	0	0	0	0	1	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0187	1	0	0	0	1	0	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	g0188	1	0	0	0	0	1	ANGPTL6	chr19	10087338	10107678
ANGPTL7_chr1_11184355_11200981	0/0	g0001	147	9	30	86	5	17	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0002	39	7	9	14	2	7	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0003	34	29	4	0	0	1	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	1/1	g0004	27	2	7	10	3	3	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0005	19	0	6	9	0	4	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0006	15	12	1	2	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0007	10	10	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0008	8	0	0	8	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0009	7	7	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0010	7	0	4	1	0	2	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0011	6	1	0	0	0	5	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0012	4	0	0	4	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0013	3	3	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0014	3	3	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0015	3	3	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0016	3	3	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0017	2	0	0	2	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0018	2	2	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0019	2	1	1	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0020	1	0	0	0	0	1	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0021	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0022	1	0	0	0	0	1	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0023	1	1	0	0	0	0	ANGPTL7	chr1	11184355	11200981