JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANGPTL7_chr1_11184355_11200981	0/0	g0024	1	0	0	0	1	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0025	1	0	0	0	0	1	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0026	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0027	1	0	0	0	1	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0028	1	0	1	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0029	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0030	1	0	0	0	0	1	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0031	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0032	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0033	1	1	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0034	1	1	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0035	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0036	1	1	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0037	1	0	0	0	0	1	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0038	1	1	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0039	1	0	1	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0040	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0041	1	0	0	1	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	g0042	1	1	0	0	0	0	ANGPTL7	chr1	11184355	11200981
ANGPTL8_chr19_11234619_11246943	0/0	g0001	231	47	44	102	11	27	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	1/1	g0002	137	14	28	75	5	13	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0003	17	14	0	2	0	1	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0004	10	10	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0005	6	0	1	4	0	1	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0006	4	2	1	1	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0007	2	0	0	2	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0008	2	0	0	2	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0009	2	0	0	2	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0010	2	0	0	2	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0011	2	0	0	0	0	2	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0012	2	2	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0013	2	2	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0014	1	1	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0015	1	0	0	1	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0016	1	0	0	1	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0017	1	1	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0018	1	1	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0019	1	1	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	g0020	1	1	0	0	0	0	ANGPTL8	chr19	11234619	11246943
ANG_chr14_20683764_20699183	0/1	g0001	91	4	16	50	4	16	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0002	37	2	6	26	1	2	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0003	26	4	10	5	2	5	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0004	24	0	4	20	0	0	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0005	16	0	2	11	3	0	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0006	14	12	2	0	0	0	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0007	14	0	3	7	1	3	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0008	13	0	2	11	0	0	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0009	12	0	2	10	0	0	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0010	10	1	2	7	0	0	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	g0011	10	0	0	9	0	1	ANG	chr14	20683764	20699183