JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKK1_chr11_113382779_113405416	0/0	g0084	1	0	0	0	0	1	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0085	1	1	0	0	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0086	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0087	1	0	1	0	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0088	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0089	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0090	1	1	0	0	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0091	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0092	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0093	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0094	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0095	1	0	0	0	0	1	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0096	1	1	0	0	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0097	1	0	0	1	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0098	1	1	0	0	0	0	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	g0099	1	0	0	0	1	0	ANKK1	chr11	113382779	113405416
ANKLE1_chr19_17276901_17292646	0/1	g0001	124	9	24	78	2	10	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0002	64	9	10	32	3	10	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0003	62	22	5	30	3	2	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0004	38	3	9	20	2	4	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0005	21	9	6	0	1	5	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0006	15	0	7	3	2	3	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0007	8	6	2	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0008	7	2	3	0	1	1	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0009	7	0	1	6	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0010	7	0	2	4	0	1	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0011	6	6	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0012	4	4	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0013	4	3	1	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0014	3	2	0	0	1	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0015	3	0	1	0	0	2	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0016	3	3	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0017	2	2	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0018	2	0	2	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0019	2	2	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0020	2	2	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	1/0	g0021	1	0	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0022	1	0	0	0	1	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0023	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0024	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0025	1	0	1	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0026	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0027	1	0	1	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0028	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0029	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0030	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0031	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0032	1	0	0	1	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0033	1	0	0	1	0	0	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	g0034	1	1	0	0	0	0	ANKLE1	chr19	17276901	17292646