JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCC9_chr12_21792389_21946426	0/0	g0186	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0187	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0188	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0189	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0190	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0191	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0192	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0193	1	0	1	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	1/0	g0194	1	0	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0195	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0196	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0197	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0198	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0199	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0200	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0201	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0202	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0203	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0204	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0205	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0206	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0207	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0208	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0209	1	1	0	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0210	1	0	1	0	0	0	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	g0211	1	0	0	1	0	0	ABCC9	chr12	21792389	21946426
ABCD1_chrX_153719856_153749755	0/0	g0001	56	7	13	30	1	5	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0002	55	1	13	33	0	8	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0003	15	2	8	0	3	2	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0004	12	12	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0005	11	0	0	11	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0006	9	0	0	2	1	6	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0007	7	7	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0008	5	5	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0009	4	0	1	3	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0010	4	4	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0011	4	0	0	4	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0012	3	0	0	3	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0013	3	1	0	2	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0014	3	0	2	0	1	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/1	g0015	3	0	1	0	1	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0016	3	3	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0017	2	0	0	0	2	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0018	2	0	0	2	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0019	2	2	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0020	2	2	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0021	2	2	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0022	2	2	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0023	2	2	0	0	0	0	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	g0024	2	1	1	0	0	0	ABCD1	chrX	153719856	153749755