JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKMY2_chr7_16594779_16650754	0/0	g0352	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0353	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0354	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0355	1	0	1	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0356	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0357	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0358	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0359	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0360	1	0	1	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0361	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0362	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0363	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0364	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0365	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0366	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0367	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0368	1	0	1	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0369	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0370	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0371	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0372	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0373	1	0	1	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0374	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0375	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0376	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0377	1	1	0	0	0	0	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	g0378	1	0	0	1	0	0	ANKMY2	chr7	16594779	16650754
ANKRA2_chr5_73547190_73570639	0/0	g0001	63	1	7	49	0	6	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/1	g0002	59	10	15	20	4	9	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0003	33	1	7	17	3	5	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0004	27	2	13	8	4	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0005	20	1	1	15	0	3	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0006	12	11	1	0	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0007	11	10	1	0	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0008	11	10	1	0	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0009	7	0	0	7	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0010	7	0	6	1	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0011	6	0	1	5	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	1/0	g0012	6	0	4	0	0	1	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0013	6	6	0	0	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0014	5	0	0	5	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0015	4	0	0	4	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0016	4	3	1	0	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0017	3	0	0	0	2	1	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0018	3	3	0	0	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0019	3	0	1	0	0	2	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0020	3	0	0	0	1	2	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0021	3	3	0	0	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0022	3	1	1	1	0	0	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	g0023	2	1	1	0	0	0	ANKRA2	chr5	73547190	73570639