JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKRD22_chr10_88814896_88856844	1/0	g0332	1	0	0	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0333	1	1	0	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0334	1	1	0	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0335	1	1	0	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0336	1	1	0	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0337	1	0	0	0	0	1	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0338	1	0	1	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0339	1	0	0	0	1	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0340	1	1	0	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0341	1	1	0	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0342	1	0	1	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0343	1	0	1	0	0	0	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	g0344	1	0	0	0	0	1	ANKRD22	chr10	88814896	88856844
ANKRD23_chr2_96832912_96849021	1/1	g0001	151	12	40	60	14	23	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0002	27	1	6	18	0	2	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0003	20	9	0	9	0	2	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0004	14	3	2	7	0	2	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0005	12	12	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0006	10	9	1	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0007	8	8	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0008	6	5	1	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0009	5	0	0	5	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0010	5	0	0	5	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0011	5	5	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0012	4	4	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0013	4	0	0	4	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0014	3	1	1	1	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0015	3	0	2	1	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0016	3	0	0	3	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0017	2	0	0	2	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0018	2	0	0	2	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0019	2	1	0	1	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0020	2	2	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0021	2	2	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0022	2	0	2	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0023	2	2	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0024	2	0	0	2	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0025	1	0	0	0	0	1	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0026	1	1	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0027	1	0	0	0	0	1	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0028	1	0	1	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0029	1	0	0	0	0	1	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0030	1	1	0	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0031	1	0	0	1	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0032	1	0	0	1	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0033	1	0	1	0	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0034	1	0	0	1	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0035	1	0	0	1	0	0	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0036	1	0	0	0	0	1	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	g0037	1	0	0	1	0	0	ANKRD23	chr2	96832912	96849021