JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKRD29_chr18_23593926_23667911	0/0	g0311	1	0	0	0	1	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0312	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0313	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0314	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0315	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0316	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0317	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0318	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0319	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0320	1	0	0	0	0	1	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0321	1	0	1	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0322	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0323	1	0	1	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0324	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0325	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0326	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0327	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0328	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0329	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0330	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0331	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0332	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0333	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0334	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0335	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0336	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	g0337	1	1	0	0	0	0	ANKRD29	chr18	23593926	23667911
ANKRD2_chr10_97567779_97588884	0/0	g0001	43	5	9	26	2	1	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0002	39	5	5	17	3	9	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0003	36	0	9	21	1	5	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0004	25	8	3	12	0	2	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0005	17	1	1	13	0	2	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0006	14	0	0	14	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0007	11	4	1	6	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0008	9	0	0	9	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0009	8	0	2	2	0	4	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0010	8	0	6	0	1	1	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0011	8	7	1	0	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0012	7	0	5	2	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0013	5	0	2	0	1	2	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0014	5	1	2	2	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0015	5	0	1	4	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0016	5	1	2	0	2	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0017	4	0	4	0	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0018	4	0	0	3	0	1	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0019	4	0	0	4	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	1/0	g0020	3	0	0	0	1	1	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0021	3	3	0	0	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0022	3	1	0	2	0	0	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	g0023	3	3	0	0	0	0	ANKRD2	chr10	97567779	97588884