JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCD3_chr1_94413389_94523663	0/0	g0338	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0339	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0340	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0341	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0342	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0343	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0344	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0345	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0346	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0347	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0348	1	0	0	1	0	0	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0349	1	0	0	0	0	1	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	g0350	1	1	0	0	0	0	ABCD3	chr1	94413389	94523663
ABCD4_chr14_74280269_74307934	0/0	g0001	41	8	2	26	0	5	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0002	26	1	10	7	3	5	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0003	15	0	4	9	1	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0004	15	0	2	7	1	5	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0005	9	0	0	9	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0006	7	0	4	2	0	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0007	6	0	5	0	0	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0008	6	0	6	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0009	6	5	1	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0010	4	0	1	3	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0011	4	3	1	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0012	4	0	0	4	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0013	3	0	0	1	1	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0014	3	3	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0015	3	3	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0016	3	2	1	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0017	3	3	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0018	3	0	1	2	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0019	3	0	0	3	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0020	3	3	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0021	3	0	0	3	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0022	3	1	1	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0023	3	0	1	0	2	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0024	3	0	1	1	0	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0025	3	0	0	3	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0026	2	0	1	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0027	2	0	0	0	1	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0028	2	0	2	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0029	2	0	0	2	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0030	2	0	0	1	0	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0031	2	1	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0032	2	2	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0033	2	1	1	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0034	2	0	1	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0035	2	1	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0036	2	2	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0037	2	2	0	0	0	0	ABCD4	chr14	74280269	74307934