JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCD4_chr14_74280269_74307934	0/0	g0188	1	0	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0189	1	0	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0190	1	0	1	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0191	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0192	1	0	0	0	0	1	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0193	1	0	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0194	1	0	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0195	1	0	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0196	1	0	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0197	1	0	0	0	1	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0198	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0199	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0200	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0201	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0202	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0203	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0204	1	1	0	0	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0205	1	0	0	1	0	0	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	g0206	1	0	1	0	0	0	ABCD4	chr14	74280269	74307934
ABCE1_chr4_145093311_145134524	0/0	g0001	24	3	8	7	1	5	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0002	23	2	8	12	0	1	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0003	18	0	9	5	2	2	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0004	8	2	2	3	1	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0005	8	2	1	2	1	2	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0006	6	6	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0007	5	1	3	0	1	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0008	4	4	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0009	4	2	0	2	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0010	4	3	1	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0011	3	2	1	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0012	3	3	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0013	3	3	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0014	3	2	1	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0015	3	0	0	3	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0016	3	3	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0017	3	3	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0018	2	0	0	2	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0019	2	0	0	0	0	2	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0020	2	0	0	1	1	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0021	2	0	0	2	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0022	2	1	1	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0023	2	2	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0024	2	2	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0025	2	2	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0026	2	0	0	2	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0027	2	1	0	1	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/1	g0028	2	0	0	0	1	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0029	2	2	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0030	2	2	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0031	2	2	0	0	0	0	ABCE1	chr4	145093311	145134524