JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKRD49_chr11_94488984_94504578	0/0	g0018	1	0	0	1	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0019	1	0	0	0	0	1	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0020	1	0	0	0	0	1	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0021	1	0	0	1	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0022	1	0	0	1	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0023	1	1	0	0	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0024	1	1	0	0	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0025	1	0	1	0	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0026	1	0	0	1	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0027	1	1	0	0	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0028	1	0	0	0	1	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0029	1	1	0	0	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0030	1	1	0	0	0	0	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	g0031	1	1	0	0	0	0	ANKRD49	chr11	94488984	94504578
ANKRD50_chr4_124659048_124717732	0/0	g0001	18	0	0	18	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0002	18	3	4	7	1	3	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0003	7	1	3	0	1	2	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0004	7	0	3	2	0	2	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0005	7	0	4	3	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0006	6	0	0	2	1	3	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0007	6	6	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0008	5	0	1	4	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0009	4	0	0	4	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0010	4	0	0	4	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0011	4	1	2	0	1	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0012	4	0	0	4	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0013	4	0	1	3	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0014	4	0	3	0	0	1	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0015	4	4	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0016	4	0	0	4	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0017	4	0	0	4	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0018	4	0	0	4	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0019	3	0	1	2	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0020	3	0	0	3	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0021	3	0	1	1	0	1	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0022	3	3	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0023	3	3	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0024	3	0	0	3	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0025	3	2	1	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0026	2	2	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0027	2	2	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0028	2	0	0	2	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0029	2	0	1	0	1	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0030	2	0	0	2	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0031	2	2	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0032	2	0	0	2	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0033	2	0	0	2	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0034	2	0	0	2	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0035	2	2	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0036	2	2	0	0	0	0	ANKRD50	chr4	124659048	124717732