JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCE1_chr4_145093311_145134524	0/0	g0132	1	1	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0133	1	0	0	0	0	1	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0134	1	1	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0135	1	1	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	g0136	1	1	0	0	0	0	ABCE1	chr4	145093311	145134524
ABCF1_chr6_30566442_30596522	0/0	g0001	16	4	6	3	3	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0002	13	1	1	7	1	3	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0003	10	3	6	0	1	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0004	10	0	3	4	2	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0005	9	0	0	8	0	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0006	8	0	6	2	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0007	8	1	0	6	0	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0008	6	0	0	6	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0009	6	0	1	5	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/1	g0010	6	0	0	4	0	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0011	5	0	0	4	0	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0012	5	0	0	5	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0013	5	0	0	5	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0014	5	0	2	1	0	2	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0015	5	1	3	0	1	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0016	5	5	0	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0017	5	0	0	5	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0018	4	0	1	3	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0019	4	0	4	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0020	4	1	2	0	1	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0021	4	4	0	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0022	4	0	0	4	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0023	4	0	0	4	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0024	4	0	2	0	1	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0025	4	0	2	0	0	2	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0026	3	0	0	3	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0027	3	0	0	3	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0028	3	0	2	1	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0029	3	1	0	2	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0030	3	3	0	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0031	3	3	0	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0032	3	0	1	1	0	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0033	3	1	2	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0034	3	0	0	3	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0035	3	1	1	0	0	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0036	3	0	2	0	0	1	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0037	2	0	0	2	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0038	2	2	0	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0039	2	2	0	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0040	2	2	0	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0041	2	1	1	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0042	2	0	2	0	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0043	2	0	0	2	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0044	2	1	0	1	0	0	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	g0045	2	1	1	0	0	0	ABCF1	chr6	30566442	30596522