JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKRD50_chr4_124659048_124717732	0/0	g0237	1	0	1	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0238	1	1	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0239	1	1	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0240	1	1	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0241	1	1	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0242	1	1	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0243	1	1	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0244	1	1	0	0	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0245	1	0	0	1	0	0	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	g0246	1	0	0	1	0	0	ANKRD50	chr4	124659048	124717732
ANKRD52_chr12_56232807_56263384	0/0	g0001	21	11	4	4	0	2	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0002	13	1	3	4	5	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0003	10	3	4	3	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0004	6	6	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0005	5	0	0	5	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0006	4	1	2	0	0	1	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0007	4	2	0	1	0	1	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0008	4	0	0	4	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0009	4	1	0	2	0	1	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0010	4	3	1	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0011	3	0	0	3	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0012	3	0	0	3	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0013	3	0	0	2	0	1	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0014	3	0	0	2	0	1	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0015	3	3	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0016	2	0	1	1	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0017	2	0	0	2	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0018	2	0	2	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0019	2	0	1	1	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0020	2	0	2	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0021	2	1	1	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0022	2	0	0	2	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0023	2	2	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0024	2	0	2	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0025	2	0	1	0	0	1	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0026	2	0	0	2	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0027	2	0	0	0	2	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0028	2	2	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0029	2	2	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0030	2	2	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0031	2	1	1	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0032	1	1	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0033	1	0	0	1	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0034	1	0	0	1	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0035	1	1	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0036	1	1	0	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0037	1	0	0	0	0	1	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0038	1	0	0	1	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0039	1	0	1	0	0	0	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	g0040	1	0	0	0	0	1	ANKRD52	chr12	56232807	56263384